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<TITLE>Complex Biological Systems (Readings), M.Sc. in Bioinformatics</TITLE>
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<H1>Πολύπλοκα Βιολογικά Συστήματα
(Μεταπτυχιακό Βιοπληροφορικής, Παν. Αθηνών)</H1>
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<H1>Readings</H1>

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<B><I>Η πρόσβαση στο παρακάτω υλικό γίνεται μέσω του <U>secure server</U> του
Μεταπτυχιακού Προγράμματος και μέσω του <U>eclass</U>.</I></B>
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<B><I>Συνιστάται η ελεύθερη επιλογή και μελέτη ενός τουλάχιστον θεμελιώδους άρθρου/κεφαλαίου ανά ενότητα.</I></B>
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<A NAME="Intro">
<H2>Ενότητα 1. Εισαγωγή</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>G.Weisbuch : The complex adaptive systems approach to biology, Evolution
   and Cognition, 1999.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Weisbuch1999.pdf">PDF, 11 σελίδες, 109K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>N.Packard, S.Wolfram : Two-dimensional cellular automata, Journal of Statistical
   Physics, 38:901-946, March 1985.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/PackardWolfram1985.pdf">PDF, 48 σελίδες, 875K</A>
</UL>

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<A NAME="Roots">
<H2>Ενότητα 2. Ιστορία, ρίζες, αντικείμενο</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>Introduction to the greek edition of Maturana & Varela's
   "Tree of knowledge", 1992 (by S.Manousselis).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/VarelaByManousselis1992.pdf">PDF, 28 σελίδες, 3501K</A>
<LI>M.A.Bedau et al. : Open problems in artificial life, Artificial
   Life Journal, 2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/BedauEtAl2000.pdf">PDF, 14 σελίδες, 126K</A>
<LI>M.A.Bedau : Artificial life, in "Blackwell Guide to the Philosophy
   of Computing and Information", by L.Floridi (Ed.), 2001.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Bedau2001.pdf">PDF, 24 σελίδες, 98K</A>
<LI>R.A.Brooks : Intelligence without representation, Artificial
   Intelligence Journal, 1991.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Brooks1991.pdf">PDF, 12 σελίδες, 712K</A>
<LI>P.Maes : Modeling adaptive autonomous agents, Artificial
   Life Journal, 1994.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Maes1994.pdf">PDF, 37 σελίδες, 251K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>P.Agre : Routines, MIT Artificial Intelligence Lab. Memo 828, 1985.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Agre1985.pdf">PDF, 28 σελίδες, 3512K</A>
<LI>P.Agre, D.Chapman : What are plans for?, MIT Artificial Intelligence Lab. Memo 1050a, 1989.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/AgreChapman1989.pdf">PDF, 30 σελίδες, 2316K</A>
<LI>M. Boden : Autonomy and artificiality, AISB Quarterly, 1993/4, also Univ. of Sussex CSRP 307
   (Cognitive Science Research Paper).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Boden1993.pdf">PDF, 14 σελίδες, 63K</A>
<LI>R.A.Brooks : Intelligence without reason, Artificial
   Intelligence Memo 1293, MIT AI Lab, April 1991.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Brooks1991Reason.pdf">PDF, 28 σελίδες, 342K</A>
<LI>L.Steels : The artificial life roots of artificial intelligence,
   Artificial Life Journal, 1994.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Steels1994.pdf">PDF, 87 σελίδες, 400K</A>
<LI>A.M.Turing : Computing machinery and intelligence, Mind 59:433-460, 1950.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Turing1950.pdf">PDF, 21 σελίδες, 150K</A>
</UL>

<A NAME="Behavior">
<H2>Ενότητα 3. Συμπεριφορά I (Κίνηση, έλεγχος, ρύθμιση)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>V. Braitenberg : Vehicles, 1986 (chapters 1-7).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Braitenberg1986.pdf">PDF, 22 σελίδες, 309K</A>
<LI>D.Cliff : Biologically-Inspired Computing Approaches to Cognitive
   Systems: A partial tour of the literature, HP Bristol Report
   HPL-2003-11.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Cliff2003a.pdf">PDF, 56 σελίδες, 718K</A>
<LI>D.Cliff : Neuroethology, Computational, in M.A.Arbib (ed.), Handbook
   of Brain Theory and Neural Networks, 2nd edition, 2003.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Cliff2003b.pdf">PDF, 22 σελίδες, 168K</A>
<LI>A.Guillot, J.-A.Meyer : The animat contribution to cognitive
   systems research, Journal of Cognitive Systems Research, 2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/GuillotMeyer2000.pdf">PDF, 8 σελίδες, 60K</A>
<LI>D.McFarland: Animals as cost-based robots, International Studies in
   the Philosophy of Science, 6(2):133-153, 1992.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/McFarland1992.pdf">PDF, 21 σελίδες, 1121K</A>
<LI>A.Tyrrell : The use of hierarchies for action selection,
   Adaptive Behavior Journal, 1993.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Tyrrell1993.pdf">PDF, 34 σελίδες, 14163K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>R.D.Beer, H.J.Chiel : Neural implementation of motivated behavior:
   Feeding in an artificial insect, in D. Touretzky (Ed.), Advances in
   Neural Information Processing Systems 2, Morgan Kaufmann, pp. 44-51,
   1989.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Beer&Chiel1989.pdf">PDF, 8 σελίδες, 859K</A>
<LI>D.McFarland : Animal behavior, 3rd edition, 1998 (chapters 24,25,
   animal economics & robotics).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/McFarland1998b.pdf">PDF, 43 σελίδες, 14632K</A>
<LI>B.Webb, R.Harrison : Integrating sensorimotor systems in a robot
   model of cricket behaviour, SPIE Proceedings, 2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Webb2000.pdf">PDF, 12 σελίδες, 309K</A>
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<H2>Ενότητα 4. Συμπεριφορά II (Μάθηση)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>D.Hebb : The organization of behavior, 1949 (introduction and
   chapter 4, growth of assembly, included in "Neurocomputing -
   Foundations of research" by Anderson & Rosenfeld, 1988).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Hebb1949.pdf">PDF, 28 σελίδες, 1699K</A>
<LI>D.McFarland : Animal behavior, 3rd edition, 1998 (chapter 17,
   conditioning & learning).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/McFarland1998a.pdf">PDF, 15 σελίδες, 2932K</A>
<LI>R.S.Sutton, A.G.Barto : Reinforcement learning - An introduction, 1998,
   (chapter 1, introduction).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/SuttonBarto1998.pdf">PDF, 25 σελίδες, 76K</A>
<LI>O.Trullier et al. : Biologically-based artificial navigation systems -
   Review and prospects, Progress in Neurobiology, 1997.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Trullier1997.pdf">PDF, 94 σελίδες, 967K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>C.Balkenius : Spatial learning with perceptually grounded
   representations, Robotics and Autonomous systems, 25(1998):165-175.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Balkenius1998.pdf">PDF, 11 σελίδες, 751K</A>
<LI>G.Beauchamp : Learning rules for social foragers: Implications for the
   producer-scrounger game and ideal-free distribution theory, Journal of
   Theoretical Biology, 207(2000):21-35.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Beauchamp2000.pdf">PDF, 15 σελίδες, 208K</A>
<LI>T.Hartley, N.Burgess, C.Lever, F.Cacucci, J.O'Keefe : Modeling place
   fields in terms of the cortical inputs to the hippocampus, Hippocampus
   10:369-379, 2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/HartleyBurgessEtAl2000.pdf">PDF, 11 σελίδες, 434K</A>
<LI>M.J.Mataric : Integration of representation into goal-driven
   behavior-based robots, IEEE Transactions on Robotics and Automation,
   8(3):304-312, 1992.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Mataric1992.pdf">PDF, 9 σελίδες, 1747K</A>
<LI>E.C.Tolman : Cognitive maps in rats and men, The Psychological Review,
   55(4):189-208, 1948.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Tolman1948.pdf">PDF, 14 σελίδες, 237K</A>
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<A NAME="Populations">
<H2>Ενότητα 5. Πληθυσμοί</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>R.Durrett, S. Levin : The importance of being discrete (and spatial),
   Theoretical Population Biology, 46:363-394, 1994.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/DurrettLevin1994.pdf">PDF, 32 σελίδες, 1162K</A>
<LI>S.Railsback : Complex from complex adaptive systems as a framework for individual-based modeling,
   Ecological Modeling, 139:47-62, 2001.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Railsback2001.pdf">PDF, 16 σελίδες, 124K</A>
<LI>C.Reynolds : Flocks, herds and schools : A distributed behavioral
   model, SIGGRAPH-87, 21(4).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Reynolds1987.pdf">PDF, 13 σελίδες, 120K</A>
<LI>J.Schull : Are species intelligent?, Behavioral and Brain Sciences,
   13:63-108, 1990.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Schull1990.pdf">PDF, 28 σελίδες, 3526K</A>
<LI>W.G.Wilson : Lotka's game in predator-prey theory : Linking populations
   to individuals, Theoretical Population Biology, 50:368-393, 1996.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Wilson1996.pdf">PDF, 26 σελίδες, 2040K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>R.Schoonderwoerd, O.Holland, J.Bruten, L.Rothkrantz : Ant-based load
   balancing in telecommunication networks, Adaptive Behavior Journal,
   5(2):169-207, 1997.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/SchoonderwoerdEtAl1996.pdf">PDF, 26 σελίδες, 152K</A>
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<A NAME="Molecular">
<H2>Ενότητα 6. Μοριακά μοντέλα</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>R.J. Bagley, J.D. Farmer and W.Fontana : Evolution of a Metabolism,
   in: Artificial Life II, C.G.Langton et al. (eds.), pp. 141-158,
   Addison-Wesley, 1991.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/BagleyEtAl1991.pdf">PDF, 10 σελίδες, 902K</A>
<LI>H. de Jong : Modeling and simulation of genetic regulatory
   systems: A literature review, INRIA Research Report 4032, September 2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/deJong2000.pdf">PDF, 46 σελίδες, 493K</A>
<LI>W.Fontana : Algorithmic Chemistry, in: Artificial Life II,
   C.G.Langton et al. (eds.), pp. 159-209, Addison-Wesley, 1991.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Fontana1991.pdf">PDF, 26 σελίδες, 2267K</A>
<LI>R.V.Sole, R.Pastor-Satorras : Complex networks in genomics and
   proteomics, In: Handbook of Graphs and Networks, S. Bornholdt
   & H. G. Schuster (eds.), John Wiley-VCH, 2002.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/SolePastor2002.pdf">PDF, 25 σελίδες, 694K</A>
<LI>O.Wolkenhauer, H.Kitano, K-H.Cho : An introduction to systems biology,
   IEEE Control Systems Magazine, Vol.23, No.4, 38-48, August 2003.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/WolkenhauerKitano2003.pdf">PDF, 14 σελίδες, 238K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>R. J.Bagley, J.D.Farmer : Spontaneous emergence of a metabolism, 
   in: Artificial Life II, C.G.Langton et al. (eds.), pp. 93-140,
   Addison-Wesley, 1991.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/BagleyFarmer1991.pdf">PDF, 25 σελίδες, 2514K</A>
<LI>H.Baltscheffsky, C.Blomberg, H.Liljenstroem, B.I.B.Lindahl, P.Arhem :
   On the origin and evolution of life - An introduction, Journal of
   Theoretical Biology, 187(1997):453-459.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/BaltscheffskyEtAl1997.pdf">PDF, 7 σελίδες, 153K</A>
<LI>W.Fontana, L.W.Buss: What would be conserved if "the tape were played
   twice"?, Proceedings of the National Academy of Sciences (USA), Vol.91,
   757-761, January 1994.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/FontanaBuss1994.pdf">PDF, 5 σελίδες, 1150K</A>
<LI>L.Raeymaekers : Dynamics of boolean networks controlled by
   biologically meaningful functions, Journal of Theoretical Biology,
   218:331-341, 2002.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Raeymaekers2002.pdf">PDF, 11 σελίδες, 160K</A>
<LI>I.Shmulevich, E.Dougherty, S.Kim, W.Zhang : Probabilistic boolean
   networks - A rule-based uncertainty model for gene regulatiry networks,
   Bioinformatics 18(2):261-274, 2002.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/ShmulevichEtAl2002.pdf">PDF, 14 σελίδες, 198K</A>
<LI>L.Varetto : Studying artificial life with a molecular automaton,
   Journal of Theoretical Biology, 193(1998):257-285.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Varetto1998.pdf">PDF, 29 σελίδες, 508K</A>
<LI>Journal of Theoretical Biology, Special issue on Metabolic Control
   Vol. 182, Issue 3, 7 October 1996.
<BR><A HREF="http://www.sciencedirect.com/science?_ob=PublicationURL&_tockey=%23TOC%236932%231996%23998179996%23312579%23FLT%23&_cdi=6932&_pubType=J&view=c&_auth=y&_acct=C000059671&_version=1&_urlVersion=0&_userid=83473&md5=75aa73cb8b2cbdaff25d9f74268a1d78">Available online from Science Direct</A>
</UL>

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<A NAME="Development">
<H2>Ενότητα 7. Ανάπτυξη I (Μορφές, τύποι, κανόνες)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>P.Agarwal : Cellular segregation and engulfment simulations using the
   Cell Programming Language, Journal of Theoretical Biology, 176(1995):79-89.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Agarwal1995.pdf">PDF, 11 σελίδες, 1290K</A>
<LI>R.Dawkins : The blind watchmaker, Longman Press, 1986
   (chapter 3 : Accumulating small changes, greek translation)
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Dawkins1986.pdf">Chapter 3, PDF, 45 σελίδες, 17108K</A>
<LI>P.Prusinkiewicz, M.Hammel, J.Hana, R.Mech: Visual models of plant
   development, In: Handbook of Formal Languages, by G.Rozenberg and
   A.Salomaa (Eds.), Springer Verlag, 1996.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/PrusinkiewiczEtAl1996.ps">PS, 49 σελίδες, 7645K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>A.Cangelosi, D.Parisi, S.Nolfi : Cell division and migration in a 'genotype'
   for neural networks, Network, 5:497-515, 1994.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/CangelosiEtAl1994.pdf">PDF, 25 σελίδες, 126K</A>
<LI>A.M.Turing : The chemical basis of morphogenesis, Philosophical
   Transactions of the Royal Society of London, Series B (Biological
   Sciences), Volume 237, Issue 641, pages 37-72, August 1952.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Turing1952.pdf">PDF, 37 σελίδες, 1210K</A>
</UL>

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<H2>Ενότητα 8. Ανάπτυξη ΙI (Ισορροπίες, παθολογίες)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>C.Furusawa, K.Kaneko : Emergence of rules in cell society : Differentiation,
   Hierarchy and Stability, Bulletin of Mathematical Biology, 60:659-687,
   1998.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/FurusawaKaneko1998.pdf">PDF, 29 σελίδες, 1245K</A>
<LI>B.K.Hall : Evolutionary Developmental Biology, 2nd Edition, Kluwer, 1999. Chapters 23 (Time and place in development) & 24 (Time and place in evolution: Heterochrony and heterotopy).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Hall1999_Chapters23&24.pdf">PDF, 26 σελίδες, 5485K</A>
<LI>A.Perelson, G.Weisbuch : Immunology for physicists,
   Review of Modern Physics, 69(4):1219-1267, 1997.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/PerelsonWeisbuch1997.pdf">PDF, 49 σελίδες, 1828K</A>
<BR>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>R.J.De Boer, A.A.Freitas, A.S.Perelson : Resource competition determines
   selection of B cell repertoires, Journal of Theoretical Biology,
   212(2001):333-343.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/DeBoerEtAl2001.pdf">PDF, 11 σελίδες, 313K</A>
</UL>

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<A NAME="Evolution">
<H2>Ενότητα 9. Εξέλιξη I (Τεχνικές)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>R.D.Beer, R.D.Quinn, H.J.Chiel, R.E.Ritzmann : Biologically inspired
   approaches to robotics, Communications of the ACM, 40(3):30-38, March 1997.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/BeerEtAl1997.pdf">PDF, 9 σελίδες, 1157K</A>
<LI>J.Koza : Genetic evolution and co-evolution of computer programs,
   Proceedings Artificial Life II, 1990.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Koza1990.pdf">PDF, 33 σελίδες, 190K</A>
<LI>Z.Michalewicz, R.Hinterding, M.Michalewicz : Evolutionary algorithms,
   Chapter 2 in Fuzzy Evolutionary Computation, W.Pedrycz (editor), Kluwer
   Academic, 1997.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Michalewicz1997.pdf">PDF, 29 σελίδες, 324K</A>
<LI>M.Mitchell : An introduction to genetic algorithms, MIT Press, 1996
   (chapter 1 : general overview).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Mitchell1996.pdf">PDF, 26 σελίδες, 774K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>M.Dorigo, G.DiCaro, L.M.Gambardella : Ant algorithms for discrete
   optimization, Journal of Artificial Life, 1999.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/DorigoEtAll1999.pdf">PDF, 36 σελίδες, 339K</A>
<LI>P.Husbands, I.Harvey, D.Cliff, G.Miller : Artificial evolution - A new
   path for artificial intelligence?, Brain and Cognition, 34(1997):130-159.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/HusbandsEtAl1997.pdf">PDF, 30 σελίδες, 909K</A>
<LI>D.Jefferson, R.Collins, C.Copper, M.Dyer, M.Flowers, R.Korf, C.Taylor,
   A.Wang, Evolution as a Theme in Artificial Life : The Genesys/Tracker
   System, in Langton et al. (Ed.), Artificial Life II, 1991.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/JeffersonEtAl1991.pdf">PDF, 15 σελίδες, 216K</A>
<LI>S.Nolfi : Learning and evolution in neural networks, 
   in M. A.Arbib (Ed.), Handbook of brain theory and neural networks,
   Second Edition. Cambridge, MA: MIT Press, pp.415-418.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Nolfi2002.pdf">PDF, 8 σελίδες, 30K</A>
<LI>S.Nolfi, D.Parisi : Evolution of artificial neural networks,
   in M. A.Arbib (Ed.), Handbook of brain theory and neural networks,
   Second Edition. Cambridge, MA: MIT Press, pp.418-421.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/NolfiParisi2002.pdf">PDF, 8 σελίδες, 41K</A>
</UL>

<P>
<HR>
<P>

<H2>Ενότητα 10. Εξέλιξη II (Φαινόμενα πληθυσμών)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>R.Dawkins : The selfish gene, Oxford University Press, 1976
   (chapter 1 : What is man ?, chapter 11 : Memes, the new replicators, greek translation)
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Dawkins1976a.pdf">Chapter 1, PDF, 11 σελίδες, 2400K</A>
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Dawkins1976b.pdf">Chapter 11, PDF, 12 σελίδες, 3280K</A>
<LI>U. Dieckmann, M. Doebeli : On the origin of species by sympatric
   speciation, Nature, 400(6742):311-2, Jul 22 1999.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/DieckmannDoebeli1999.pdf">PDF, 19 σελίδες, 486K</A>
<LI>S.A.L.M.Kooijman, P.Auger, J.C.Poggiale, B.W.Kooi : Quantitative steps
   in symbiogenesis and the evolution of homeostasis, Biol.Rev. 2003.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/KooyAuge2003.pdf">PDF, 29 σελίδες, 404K</A>
<LI>T.S.Ray : An evolutionary approach to synthetic biology - Zen and the
   art of creating life, Artificial Life Journal, 1994.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Ray1994.pdf">PDF, 39 σελίδες, 271K</A>
<LI>P.Turney : Myths and legends of the Baldwin effect, Proceedings of the
   Workshop on "Evolutionary Computation and Machine Learning", 13th
   International Conference on Machine Learning, Bari, Italy, 1996.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Turney1996.pdf">PDF, 8 σελίδες, 33K</A>
</UL>

<B>ΣΥΜΠΛΗΡΩΜΑΤΙΚΑ</B>
<UL>
<LI>J.M.Baldwin : A new factor in evolution, American Naturalist 30,
   pages 441-451 and 536-553, June 1896.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Baldwin1896.pdf">PDF, 20 σελίδες, 95K</A>
<LI>G.E.Hinton, S.J.Nowlan : How learning can guide evolution, Complex
   Systems, 1(1987):495-502.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/HintonNowlan1987.pdf">PDF, 5 σελίδες, 104K</A>
<LI>L.Margulis : The conscious cell, Annals NY Academy of Sciences, 929:55-70, April 2001.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Margulis2001.pdf">PDF, 9 σελίδες, 4025K</A>
<LI>Wcislo, W.T. : Behavioral environments and evolutionary change,
Annual Review of Ecology and Systematics, 20:137-169, 1989.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/MoreReadings/Wcislo1989.pdf">PDF, 34 σελίδες, 3368K</A>
<LI>Memetics website
<BR><A HREF="http://www.ing.unlp.edu.ar/cetad/mos/memetic_home.html">http://www.ing.unlp.edu.ar/cetad/mos/memetic_home.html</A>
</UL>

<H2>Ενότητα 11. Εξέλιξη III (Παιχνίδια και συνεργασία)</H2>
<B>ΘΕΜΕΛΙΩΔΗ</B>
<UL>
<LI>R.Axelrod, W.Hamilton : Η εξέλιξη της συνεργασίας σε βιολογικά συστήματα, κεφάλαιο 5
του "Η εξέλιξη της συνεργασίας ", συγγρ. R.Axelrod,
   Basic Books, 1984 (μεταφρασμένο στα ελληνικά).
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/AxelrodHamilton1984.pdf">PDF, 10 σελίδες, 2670K</A>
<LI>L.A.Dugatkin : Cooperation in animals : An evolutionary overview,
   Biology and Philosophy, 17:459-476, 2002.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Dugatkin2002.pdf">PDF, 18 σελίδες, 317K</A>
<LI>W.D.Hamilton : The genetical evolution of social behaviour - I & II,
   Journal of Theoretical Biology, 7:1-16 και 17-52, 1964.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Hamilton1964a.pdf">Μέρος I, PDF, 16 σελίδες, 1036K</A>
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Hamilton1964b.pdf">Μέρος IΙ, PDF, 36 σελίδες, 2688K</A>
<LI>R.Hoffmann : Twenty years on : The evolution of cooperation revisited,
   Journal of Artificial Societies and Social Simulation, 3(2), March
   2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Hoffmann2000.pdf">PDF, 13 σελίδες, 159K</A>
<LI>J.R.Krebs, N.B.Davies : An introduction to behavioural ecology,
   (chapter 11: On selfishness and altruism), 3rd Edition, Blackwell,
   1993.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Krebs1993.pdf">PDF, 26 σελίδες, 7052K</A>
<LI>Margulis, L. (1993). Origins of species: acquired genomes and
   individuality, BioSystems, 31(2-3):121-125.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Margulis1993.pdf">PDF, 5 σελίδες, 413K</A>
<LI>T.N.Sherratt, G.Roberts : The stability of cooperation under variable
   investment, Journal of Theoretical Biology, 215:47-56, 2002.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/SherrattRoberts2002.pdf">PDF, 10 σελίδες, 213K</A>
<LI>R.Trivers : The evolution of reciprocal altruism, Quarterly Review of Biology, 46(4):35-57, 1971.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Trivers1971.pdf">PDF, 53 σελίδες, 198K</A>
<LI>E.S.Tzafestas : Spatial games with adaptive tit-for-tats, Proceedings
   of the 6th "Parallel Problem Solving from Nature" (PPSN-VI), Paris, September 2000.
<BR><A HREF="http://bioinformatics.biol.uoa.gr/msc/secure/C_SEMES/lesson4/BasicReadings/Tzafestas2000.pdf">PDF, 10 σελίδες, 115K</A>
</UL>

<P>
<HR>
<EM>Τελευταία ενημέρωση 25 Νοεμβρίου 2014.</EM><BR>
<A HREF="mailto:etzafestas@phs.uoa.gr">
<EM>Στείλτε μου mail (etzafestas@phs.uoa.gr)</EM></A><BR><BR>

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